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atomic "memory" or "code" theory of evol

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General interest discussions, not necessarily related to depletion.

Re: atomic "memory" or "code" theory of

Unread postby entropyfails » Sat 13 Jan 2007, 23:02:49

$this->bbcode_second_pass_quote('seahorse', 'E')ntropy -

I hear what you are saying, but some of your explaination still begs the question. I'm not concerned about me, my death, etc. I'm not trying to understand why "I" am alive, only using the human body as an example.


I doubt that! *grin* You ask the question because you wish to resolve it in your mind because you feel it would have some use to you. What other reason would you ask the question? Of course this goes for all human curiosity, so I'm not knocking you or saying that I'm any different here. *smile*

As for begging the question, surprisingly I agree with your assessment of my argument. But I don't know if you can find a way out of this because we have no way to measure if the information domain is the cause of the real or if the real is the cause of the information domain. The self referential nature of the concept of atoms vs information leads to begging the question no matter how you approach it. But it is fun to understand it further, so I'll try explaining a my view further.

$this->bbcode_second_pass_quote('seahorse', '
')Entropy wrote:
$this->bbcode_second_pass_quote('', 'T')hey have to. They have no choice in the matter.


You say atoms form and act because they have to - this is my point. They have to because they have some sort of atomic memory or code they carry, and information call easily be shared/transferred via photon.


Photons do a lot more than we currently understand, I agree. But I don't think they carry all information of the atoms. They do not need to.

A "photon" is just one way of looking at energy in the universe. The specialness of the photon comes from it not having mass which allows it to live in the timeless domain. Atoms are another way of looking at energy. Atoms carry with them all of the collisions and nuclear explosions that they have endured in their transformation process. They can carry information and transmit it independently of photons, so I don't see the need to make the photon any more special with regard to information. I'll illustrate my point.

Carbon Atom A heads toward Carbon Atom B. Both have been through a huge transformation process from "pure energy" to hydrogen and from hydrogen to carbon. (with steps in between). They both carry the information about all the paths they took on their long journey in the form of their X,Y,Z positions and their energetic state.

Firstly, they have never been separated at all. They are connected by gravity and have been so since the beginning. As they draw closer, whatever causes gravity makes them accelerate even faster towards each other. No photons are sent between them but they both "know" that they are moving faster and faster towards each other. So this is an easy example of transferring information without any photons.

When they collided, let us look at their state. Atom A is at position X=1 (measured at the outer rim of the electron cloud in planck units). Atom B is at position X=-1. Atom A's electrons try to go into X=0 and Atom B's electron's position tries to obtain X=0. So we can ask, what probably happens?

Well the pauli exclusion principle says that the probability of these fermions get into the next state where they are both in state 0 as

both_in_same_X = A*B - B*A
Where A and B are the probability functions of the position of the respective electrons. Obviously, both_in_same = 0. So the atoms kinetic energy goes in the opposite direction because it cannot continue in the same direction. So they have communicated again without the need for a photon to transfer information. (The communication being that they both "understood" that they couldn't be in the same place at the same time.)

And it is this case that makes the whole thing so self-recursive. We have a probability function p(x) that goes to 0. That means there is no entropy in that communication. It is always a successful communication that A cannot go into B and B cannot go into A. So we now have a communication that atoms can engage in and a probability distribution function after that collision that causes probabilistic results. Hence, at the quantum level we have Shanon entropy and thus we have a information system.

Building from that base, let us look at the next step toward life. A long Carbon-Hydrogen-Oxygen molecule is formed by some random process, we will take it's vantage point. It is in a see of somewhat similar hydrocarbons. The molecule communicates with itself in the same manner as the atoms colliding. The system increases in entropy but there are certain fundamentals that allow for perfect communication.

Now this special hydrocarbon randomly bumps into a small cluster of other hydrocarbons. These hydrocarbons that we have bumped into are not in a long chain, but the smaller parts in the "soup" happen to have a weak chemical attraction to certain parts of "us" (the longer hydrocarbon). With enough bumping around, we have doubled our size by attaching an inverse pairing of hydrocarbons. Sometime later, we bump into a rock and our "pair" splits. Now the original copy goes off and does the same thing, but the negative copy goes off and builds another original copy. Now we have "life."

So where did the information to do that "copy processes" come from? It came from the fact that we never loose the quantum information and that the quantum world allows for perfect communication but also includes entropy and thus is Shannon theoretic. The UNIVERSE is smart on a fundamental level. The ATOMS are smart, they talk to each other.

Does this make more sense?
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Re: atomic "memory" or "code" theory of

Unread postby EnergyUnlimited » Sun 14 Jan 2007, 06:20:05

$this->bbcode_second_pass_quote('seahorse', '.')..The second part of the above statement doesn't make sense. An atom does not become a part of a living thing, a living thing is the product of trillions of atoms.

However, as you said earlier in your post, $this->bbcode_second_pass_quote('', 't')hat properties of complex system are not necessarily a sum of properties of their components.


I.E. consciousness.


Why doesn't it make sense?
Zillions of hydrogen (and oxygen) atoms from your daily cup of water are becoming parts of living thing (you), as they are incorporated into many critical materials present in your body (DNA included here), often replacing other hydrogen and oxygen atoms, which are later leaving your body.

Consciousness as emerging property? Certainly yes.
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Re: atomic "memory" or "code" theory of

Unread postby eric_b » Sun 14 Jan 2007, 10:54:35

$this->bbcode_second_pass_quote('seahorse', '
')
However, a more basic question I have is, why do atoms form anything? In the billions of atoms that comprise me, why are they all working together, in me, constantly taking on new atoms and shedding old ones? Why would they have any need or desire to "survive", when atoms have no life expectancy? The atoms in my body, are as old as the known universe, yet for some reason, they have formed this person I call me, and will attempt to pass on my traits to other atoms in a code we call DNA. I ask this question for all atoms, not just ones that form people, but trees, any form.


You raise an excellent question, one that I've often wondered myself. It does seem there are some organizing principles the sciences have not yet discovered when it comes to life. It does seem that the unfolding of life is inevitable if conditions are right.

Since I'm in an exceptionally weird mood this morning please allow me to offer these excerpts from 'The Holy Science' by Swami Sri Yukteswar. I was going through my old books and came across this. I don't really know what to make of this book one way or another. Consider it food for thought. This book was originally published in 1894 (I think)

{pages 23-24}
The Word, Amen (Aum), is the beginning of the creation. The manifestation of Omnipotent Force (the Repulsion and its complimentary expression, Omniscient Feeling or Love, the Attraction) is vibration, which appears as a peculiar sound: the Word, Amen, Aum. In its different aspects Aum presents the idea of change, which is time, Kala, in the Ever-Unchangeable; and the idea of division, which is space, Desa, in the Ever-Indivisible.

The four ideas, the Word, Time, Space and the Atom. The ensuing effect is the idea of particles- the innumerable atoms, patra or anu. These four- the Word, Time, Space, and the Atom- are therefore one and the same, and substantially nothing but mere ideas.
(...)

{pages 36-38}
Action of Love. The action of Repulsion, the manifestation of the Omnipotent Energy, being thus completed {Early big bang??} the action of Attraction (the Omnipotent Love in the core of the heart) begins to be manifested. Under the influence of this Omniscient Love, The Attraction, the Atoms, being attracted towards one another {gravity??}, come nearer and nearer, taking ethereal, gaseous, fiery, liquid and solid forms.

Inanimate Kingdom Thus this visible world becomes adorned with suns, planets, and moons, which we call the inanimate kingdom of the creation.

Vegetable kingdom In this manner, when the action of Divine Love becomes well developed, the evolution of avidya, Ignorance (the particle of Darkness, Maya, the Omnipotent Energy manifested), begins to be withdrawn. Annamaya Kosha, the Atom's outer coating of gross matter being thus withdrawn, Pranamaya Kosha (the sheath composed of Karmendriyas, the organs of action) begins to operate. In this organic state the Atoms, embracing each other more closely to their heart, appear as the vegetable kingdom in the creation.

Animal kingdom When the Pranamaya Kosha becomes withdrawn, the Manomaya Kosha (the sheath composed of jnanendriyas, the organs of sense) comes to light. The Atoms then perceive the nature of the external world and, attracting other Atoms of different nature, form bodies as necessary for enjoyment, and thus the animal kingdom appears in the creation.

Mankind When Manomaya Kosha becomes withdrawn, Jnanamaya Kosha (the body of Intelligence composed of electricities) becomes perceptible. The Atom, acquiring the power of determining right and wrong, becomes man, the rational being in the creation.

Devata or Angel When man, cultivating the Divine Spirit or Omniscient Love within his heart, is able to withdrawl this Jnanamaya Kosha, then the innermost sheath, Chitta, the Heart (composed of four ideas) becomes manifest. Man is then called Devata or Angel in the creation.

Free, Sannyasi When the Heart or innermost sheath is also withdrawn, there is no longer anything to keep man in bondage to this creation of darkness, Maya. He then becomes free, Sannyasi, The Son of God, and enters into the creation of light

(...)

So it would appear the Swami agrees with your thesis. Perhaps there is an innate memory, or order, within the atoms themselves which unfolds when conditions are so.
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Re: atomic "memory" or "code" theory of

Unread postby eric_b » Sun 14 Jan 2007, 11:09:06

$this->bbcode_second_pass_quote('EnergyUnlimited', '
')
Consciousness as emerging property? Certainly yes.


If so, there's simply no way it can be explained through reductionism. Consciousness is. One can understand the periodic table of the elements, but this tells one little about the properties that molecules constructed with these atoms will assume, much less something as complex as 'life'.

The way I see it the entire universe is nothing but life.
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Re: atomic "memory" or "code" theory of

Unread postby seahorse » Sun 14 Jan 2007, 12:26:47

Random collisions between atoms explains nothing about why they then start working together, how they communicate with each other to work together, and why. We would probably find better answers studying an ant colony.

Consciousness? Obviously, the fact that consciousness exists, that memories exists, means atoms are storing information and can communicate it. Consciousness isn't merely a property, consciousness is part and parcel of the "evolutionary" process.

In fact, consciousness can't be proved. You cannot independently prove that thoughts exists. We can take each others words for it, but we can't prove they exists. We can look at EEG etc and see something is going on, but in the end, we can't see or measure the thought or determine what they will be. So, just bc you can't see a "memory" or a "code" in atoms, doesn't mean it doesn't exist.

Plus, keep in mind, I'm not suggesting that every atom carries some sort of code, that is certainly possible, but I also don't rule out that information is sent to atoms via photons from whereever to get them started. Just as we are trying to do with atoms and computer programs. We will not "code" ever atom with a future computer, we will select certain ones to store memory.
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Re: atomic "memory" or "code" theory of

Unread postby entropyfails » Sun 14 Jan 2007, 22:40:16

$this->bbcode_second_pass_quote('seahorse', 'R')andom collisions between atoms explains nothing about why they then start working together, how they communicate with each other to work together, and why. We would probably find better answers studying an ant colony.


I guess this bears repeating. Evolution is the non-random survival of randomly selected organisms. All you need is one progenitor replicator and the rest happens via well understood principles. Randomness is the reason for the proto-replicator coming into existence. It brought out a system of pattern matching and replication inherent in the universe.

Let us take apart your assertations.

"Random collisions between atomsexplains nothing about why they then start working together"

Actually, it does help explain things. The "collisions" in my example were not important, you could take many other physical principles to convey how quantum uncertainty causes information to form. As for "working together", you don't define this term at all. A hydrocarbon molecule "works together" to hold energy, but it doesn't seem to fit the general tone of your message that "life" is somehow special.

", how they communicate with each other to work together,"

We also understand this property well. Even for simple organisms, they use pattern matching machines to detect local environmental changes and convey the information via either chemical signal, electrical signal, or a physical collision (all of which have a quantum informational basis).

"and why. "

Pattern matching replicating atom structures communicate because information provides an ability to extract more work with less energy. This is well understood.

Are you asking WHY the universe exists? Because otherwise all of your questions have been answered.
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Re: atomic "memory" or "code" theory of

Unread postby EnergyUnlimited » Mon 15 Jan 2007, 05:00:04

$this->bbcode_second_pass_quote('entropyfails', 'A')re you asking WHY the universe exists?

IMO, it exists for no reason and no purpose.
Anyway, scientific investigations are unlikely to provide one with definitive answers to this question in any case.
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Re: atomic "memory" or "code" theory of

Unread postby seahorse2 » Mon 15 Jan 2007, 12:51:38

Entropy,

How did RNA first form? This, is what I'm asking. Answer that one, and you will win the nobel prize.
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Re: atomic "memory" or "code" theory of

Unread postby NEOPO » Mon 15 Jan 2007, 15:05:24

$this->bbcode_second_pass_quote('PenultimateManStanding', 'I') remember way back when when we agreed on Theosophy, NEO. My take on Theosophy was it's an elevation of plants. The mysterious power of plants. A Spritual Realm right here before us but we are too blind to see it. And yes, it includes the molecular effects of certain plants... Symbiosis or danger? My feeling is that marijuana is a trickster. I picked up the spirit of the trickster and laid it on, you took it too serious, you took it as a personal insult which it was never meant to be. I was kidding around with Raph, that's all.


Is this an apology?
One where you are ultimately right, I wrong and all is good in the world? :)
Theosophy elevates plants?
Puuh!! I am in the "spirit" world....... 8)

This was not a simple razz!!
Not here not now but if you want to say "sorry" then say it and perhaps we can move on......
and no I dont believe that the evil spirit of Loki "made you do it" as he and I have an agreement :o
________________________

The Stanzes of Dyzan.
This work represents science and religion as it once was.

Some words attempt to describe feelings because some things cannot be described in words alone and some things cannot be described at all and that is why they used symbols as well as words.
It could be said that symbols contain more data then all words combined.
When people see a stop sign they do not read "stop" they see an octagon painted red with white writing.
They do not think octagon painted red with white writing they think "traffic""death""accident""run over people""crosswalk" etc etc.
Symbols are very powerful.

Some of the ancients word/meanings are huge and similar to how much meaning is conveyed when we say "big bang".

Big bang according to the stanzas goes thus:
$this->bbcode_second_pass_quote('', 'T')he last Vibration of the Seventh Eternity thrills through Infinitude. The Mother swells, expanding from within without, like the Bud of the Lotus.


The expansionary phase thus:
$this->bbcode_second_pass_quote('', 'T')he Vibration sweeps along,touching with its swift Wing the whole Universe and the Germ that dwelleth in Darkness, the Darkness that breathes over the slumbering Waters of Life..


The forming of suns, planets....all matter.
$this->bbcode_second_pass_quote('', 'D')arkness radiates Light, and Light drops one solitary Ray into the Waters, into the Mother-Deep. The Ray shoots through the Virgin Egg, the Ray causes the Eternal Egg to thrill, and drop the non-eternal Germ, which condenses into the World-Egg.


and finally back to the "origin" of the chicken/egg/memory/code/RNA/DNA thingy - an illusion.

$this->bbcode_second_pass_quote('', 'T')he Root of Life was in every Drop of the Ocean of Immortality , and the Ocean was Radiant Light, which was Fire, and Heat, and Motion. Darkness vanished and was no more; it disappeared in its own Essence, the Body of Fire and Water, of Father and Mother.

$this->bbcode_second_pass_quote('', 'L')isten, ye Sons of the Earth, to your Instructors - the Sons of the Fire. Learn,there is neither first nor last; for all is One Number,issued from No-Number.

All is one number issued from No-number....hmmmm yes.
If science and ancient religion ever come together - they may just figure some shit out :lol:
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Re: atomic "memory" or "code" theory of

Unread postby entropyfails » Mon 15 Jan 2007, 18:58:26

$this->bbcode_second_pass_quote('seahorse2', 'E')ntropy,

How did RNA first form? This, is what I'm asking. Answer that one, and you will win the nobel prize.


I'm certain that you've read the theories as much as I have. As RNA is so weak when free floating in water, it seems doubtful that it is the first replicator. Either TNA, GNA or PAH served at the basis before that. I feel PAH serves as the best candidate for the basis of life as it's even found in interstellar dust.

http://nai.arc.nasa.gov/team/index.cfm? ... ectID=1080

Anyway, the transmission of information that allows molecules to form and the REASON behind the binding energies is probably best answered by the anthropic principle. *grin* To me, asking "Why did life form on Earth?" is the same as asking, "Why do molecules form?" I'm with Energy Unlimited on this one. It is just one of those things that is true for no reason at all. Computer Science and Information Theory is filled with these sorts of "True for no Reason" principles (Like the Omega number). And that serves as the foundation for the intelligence that comes to use those Computer science theorems to live!

Note that this is different from saying "We shouldn't try to figure out how to make RNA from 'dead' material." It is simply a recognition that certain things are true in this universe for no reason at all.
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Re: atomic "memory" or "code" theory of

Unread postby seahorse2 » Mon 15 Jan 2007, 19:34:03

Entropy,

I hear what you are saying, whether we call it atomic "properties" or "atomic code" or "atomic memory" doesn't really matter to me, but I've never been satisfied with "true for no reason at all" explainations to explain such things. "Cause" without reason? There is no such thing. There is always a cause, the only question is how far back can we push it to understand the cause. Maybe, regarding atoms, it simply means we've pushed ourselves to the limits of what's knowable based on our current scientific limits.
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Re: atomic "memory" or "code" theory of

Unread postby entropyfails » Mon 15 Jan 2007, 19:58:14

$this->bbcode_second_pass_quote('seahorse2', 'E')ntropy,

I hear what you are saying, whether we call it atomic "properties" or "atomic code" or "atomic memory" doesn't really matter to me, but I've never been satisfied with "true for no reason at all" explainations to explain such things. "Cause" without reason? There is no such thing. There is always a cause, the only question is how far back can we push it to understand the cause. Maybe, regarding atoms, it simply means we've pushed ourselves to the limits of what's knowable based on our current scientific limits.


I do understand the desire to gain greater understanding besides "because I said so." *laugh* But in computer science and information theory we happen to have truths that are random. The Omega Number is a very important truth on the Halting problem but each bit of the Omega number is completely random. And you can never compress it into any smaller theory.

And the Omega theory simply states that for a given computational system, do the systems of length N run forever or halt. So if we view life as a computational system and the environment as inputs, and we have halting as death and looping as life, we find that we can never really know much about the outcome of any particular life form in the environment.

So you can see even some metaphysical tie-ins to life and death respectively. So when it comes to information processing, you will always have these unpleasant truths. So while we can say that "life has inherent meaning and value" we never will truly know anything about it. (in the sense that we will never be able to develop a consistent theory about it.)

Anyway, that's how I view the problem.
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Re: atomic "memory" or "code" theory of

Unread postby EnergyUnlimited » Tue 16 Jan 2007, 06:33:38

$this->bbcode_second_pass_quote('seahorse2', 'E')ntropy,

I hear what you are saying, whether we call it atomic "properties" or "atomic code" or "atomic memory" doesn't really matter to me, but I've never been satisfied with "true for no reason at all" explainations to explain such things. "Cause" without reason? There is no such thing.

I disagree with that statement and reasoning.
This would only hold true if time is infinited in direction of the past.
However it is not true (at least according to accepted cosmology and theories supporting it).
All evidence, we have at our disposal suggests, that everything after t=0 has its reason (constrained by QM considerations), but initial conditions at t=0 were setted for no reason at all.
NB. We have also quite convincing evidence, that there was such a thing as t=0.

I know, in legal world the idea of "no reason" is a horrific one (means noone to sue/charge), but apparently physics is working that way sometimes...

You may also note, that given radioactive atom is falling apart at particular time for no local reason at all or for "statistical reason" only.

If you want example of mathematically proven "truths without reasons", then read about that:
http://en.wikipedia.org/wiki/G%C3%B6del ... ss_theorem
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Re: atomic "memory" or "code" theory of

Unread postby Daculling » Tue 30 Jan 2007, 21:54:57

Bump,

Entropy... how was it thwarted... in our case.. the Earth

So much energy concentrated in one place.

To ask these questions...

A brief and violent thread burning, soon out.

What are the chances?

Why consider it, I am the only one that can.
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Re: atomic "memory" or "code" theory of

Unread postby EnergyUnlimited » Wed 31 Jan 2007, 09:35:56

$this->bbcode_second_pass_quote('Raphael', '
')And the Van Allen Radiation Belts in a metaphysical way make the earth look like an atom.

It does not take the imagination of a wingnut to appreciate what I am seeing here:

http://images.google.ca/images?client=firefox-a&channel=s&rls=org.mozilla%3Aen-US%3Aofficial&hl=en&q=van+allen+belts&btnG=Search+Images

The inner belt are trapped protons and the outer belt are electrons.


Those Van Allen belts around Earth are rather crap example of such "fractal similarity".

Single electron orbitting a lone neutron star would be far better example of that. Would look like "scaled up" hydrogen atom...
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