I had a quick look at the website, (and only quick, I need to go to bed).
My initial impressions is, yes some good ideas there, although probably with limited practical applications.
The idea of using the heat generated from a diesel engine is a good one, but only applys in a situation where the heat can be use effectivly. In a car, this would not be practical. How do you intend to use this extra heat to actually do significant amounts of work?
For a house running off a disel generator, it is much more practical. Run the cooling loop of the generator through some radiotors, and try and extract the heat from the exhaust.
I did spot a slip here and there,
"The Isuzu diesel generator produces 12.5 kilowatts per hour using .91 gallons of fuel to do it."
should read "The Isuzu diesel generator produces 12.5 kilowatts using .91 gallons per hour of fuel to do it."
There is no such thing as kw/h of course

.
Hang on!
You state that there is "120,000 ‘btus’ per gallon heat content in the fuel".
Then you say that you get "Net heat realized out of .91 gallons of fuel = 212,360 btu".
Somthing there doesnt add up. If you burn a gallon of fuel, you get (according to your data) 120,000btus of heat.
If you use it in a generator, you get say 60,000"btus" of electricity, but then only 60,000btus of heat. You cant end up with more energy than you started with!
I dont know where the problem is in the calculation, and I dont have time to check data/working.