Great topic, Soft_Landing! You are right -- caring for soil will be a key concern as the cost of energy and natural gas go up, and we can no longer rely on synthetic fertilizers.
The questions fascinate me too. I've been reading about this off and on for about a year. Could I try to summarize what I've learned? I'm not an expert, so please excuse my inaccuracies, those of you who are professionals.
Soils are the magical and complex interface between the lithosphere and atmosphere, the basis of almost all life on the planet.
Soils are initially formed from the breakdown of rock. Soil can be formed on site, or can be transported to the site by wind or water. The particles of soil range from very small clay particles, to medium-sized silt particles, to the relatively large pieces of sand.
A critical component of soils is organic matter -- both the creatures that live in the soil and the decomposing bodies of dead plants and animals. Living in the soil are bacteria, fungi, insects, mammals, and other lesser known creatures. They form an incredibly complex ecology that is only partly understood. The soil biology is key for sustaining fertility and soil structure....
As you point out, the bulk of what plants need does not come through the soil, but through air (oxygen and carbon dioxide) and water.
The main soil nutrients are N-P-K, as listed on bags of store-bought fertilizer.
N - Nitrogen ultimately comes from the atmosphere. It is "fixed" into a form that plants can use by lightning, leguminous plants like beans that provide a home in their roots for N-fixing bacteria , other N-fixing micro-organisms , breakdown of organic matter)
P - Phosophorous (bones, rock, breakdown of organic matter)
K - Potassium (rocks, clay. breakdown of organic matter)
In addition plants need minor nutrients in smaller quantities (magnesium, calcium, sulfur, zinc, manganese, copper, boron and iron), as well as some trace nutrients.
Each of these nutrients has a different cycle. An important consideration is whether the nutrient is in a chemical form that can be taken up by plants. For example, plants use nitrate ions (NO3-) and ammonium ions (NH4+) but cannot use nitrogen (N2) in its gaseous form. Putting nitrogen into a form usable by plants is called "fixing" nitrogen.
As you point out, nutrients are constantly being taken off site in agriculture, as crops and animals are sold to consumers. They can be replaced in several ways:
1. Ground rock can be brought in from off-site.
2. Organic matter can be grown on site or brought in, to use as mulch (on top of the soil), as compost (having been decomposed, it is dug into the soil), or dug directly into the soil without being first decomposed.
3. Organic fertilizers and amendments, which typically provide nutrients in a concentrated form. For example, seaweed emulsion, bone meal, blood meal.
4. Animal manure from on-site or off-site animals.
5. Some crops (green manure, cover crops) are grown specifically for the health of the soil. Certain plants like comfrey and rye are particular good at bringing nutrients up to the topsoil from deep in the soil.
6. Synthetic fertilizers (like the N created by the Haber process, using natural gas).
The insight of organic farming is that organic matter (e.g., humus) in the soil performs many subtle and complex functions. For example, organic matter:
1. Improves soil structure
2. Increases water-holding ability
3. Keeps nutrients in soil. Helps make them accessible to plants.
4. Acts as a buffer against extreme conditions (e.g. low or high pH)
4. Serves as a matrix for soil biology.
6. Feeds the organisms in the soil
We've been able to ignore organic matter over the last century, because we've used petroleum and natural gas to create cheap and convenient synthetic fertilizers. With peak oil, we've got to relearn to care for our soils or we will go hungry.
References:
Soil Foodweb (Elaine Ingham)
http://www.soilfoodweb.com/sfi_html/index.html
Look around -- lots of great information, but it may be in unexpected places on the site. If you ever get a chance to hear her speak, it is well worth it.
http://soils.usda.gov/sqi/soil_quality/ ... index.html
Click on the "Soil Biology Primer" for an excellent introduction, with lots of photos (big file, if I remember). The primer can be ordered in print form from Elaine Ingham's site.
http://www.uctv.tv/gardening/
Online videos of in-depth lectures on gardening by University of California agriculture specialists. See the lecture titled "Soils for the Gardener".
http://zzyx.ucsc.edu/casfs/
Huge textbook on organic farming/gardening available online as PDF files. Created by University of California, Santa Cruz, for students in its agro-ecology program. The chapters on soils are Unit 2.1 (soil physical properties), Unit 2.2 (soil chemistry and fertility), Unit 2.3 (soil biology and ecology). The site seems to be down at the moment, but when it is up, you can click on the link for the textbook and you can download the files (large files).
I've found it surprisingly difficult to get good books on soils. The older textbooks on soil science are heavy on the chemicals and dismissive of organics and soil biology. Many of the books on organic gardening, on the other hand, are superficial.
Two good introductions, aimed at farmers but useful for others, are:
"From the Soil Up" by Donald L. Schriefer (Acres, U.S.A.)
"Building Soils for Better Crops" by Fred Magdoff and Harold van Es. Sustainable Agriculture Network (SAN).
Hope this is of use!
-bart